MedakaBase for medaka fish biology by NBRP

The status of this webserver, including maintenance plans, is announced under the X(Twitter) account @NbrpMedakaOmix.
Other resource sites for medaka omics and some useful tools are introduced in this page.

- all - Oryzias latipes (Hd-rR) Oryzias sakaizumii (HNI) Oryzias latipes (HSOK) Oryzias javanicus (Penang) Oryzias celebensis (Ujung pandang)

Search tips

Example	Search results
ENSORLG00000003517	The specific target is shown
"GMP synthase"	The full name including the space in between is taken as a search word
foxl*	'*' is taken as a wildcard and all of foxl1, foxl2 and foxl3 are shown
"elongation factor" +transcription	Both words are taken as search words
"elongation factor" -transcription	Matches to the second word are excluded from those to the first word

Assembly and annotation versions adopted in this site

The current version of genome assembly and annotation is as follows.
For use of the data indicated with '#' in publications and data presentations, please contact us (see below for the contact detail).

Species	Genome	Annotation
Oryzias latipes (Hd-rR)	ASM223467v1	Ensembl: Release 107, NCBI: Release 103
Oryzias sakaizumii (HNI)	ASM223471v1	Ensembl: Release 107
Oryzias latipes (HSOK)	ASM223469v1	Ensembl: Release 107
Oryzias javanicus (Penang)	OJAV_1.1	Ensembl: Release 107, NCBI: OJAV_1.1
Oryzias celebensis (Ujung pandang)	OryCel_1.0	Ansai: 1.0
Oryzias mekongenesis (Kalasin)	fOryMek1.1#	NBRP Original: Helixer 1.0#
Oryzias luzonensis (Solsona)	fOryLuz1.1#	NBRP Original: Helixer 1.0#

Inquiries and feedback

MedakaBase development team ([email protected])