GMAP

cDNA alignment to genome.

Genome Oryzias latipes (Hd-rR)Oryzias sakaizumii (HNI)Oryzias latipes (HSOK)Oryzias javanicus (Penang)Oryzias celebensis (Ujung pandang)

Format PSL (BLAT) formatGFF3 gene formatGFF3 cDNA_match formatGFF3 EST_match formatsplice sites output (for GSNAP splicing file)introns output (for GSNAP splicing file)IIT FASTA exon map formatIIT FASTA range map formatcoords in table format(only show alignments)

Enter FASTA sequence(s) below:

Full documentation for GMAP is available here.
Reference: Thomas D. Wu and Colin K. Watanabe. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005 21: 1859-1875.